PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.173460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 142aa    MW: 15847.5 Da    PI: 10.8896
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.173460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-126534899
                    EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    + +  +++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  Cucsa.173460.1  6 FVV--TGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 53
                    455..8999***************************..8899999****997 PP

2Auxin_resp77.92.6e-2678137159
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59 
                     aahaa+t+s F+v+YnPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr+
  Cucsa.173460.1  78 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRY 137
                     79********************************86599*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.151154IPR003340B3 DNA binding domain
PfamPF023621.1E-9653IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-16867IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-141081IPR015300DNA-binding pseudobarrel domain
PfamPF065071.7E-2178137IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
NMAYLFVVTG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRATRPQTVM  60
PSSVLSSDSM HIGLLAAAAH AAATNSCFTV FYNPRASPSE FVIPLTKYVK AVFHTRVSVG  120
MRFRMLFETE ESSVRRYCNF K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-557137213343Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234070.0KU323407.1 UNVERIFIED: Trichosanthes dioica clone TdARF_5 auxin response factor 8-like mRNA, partial sequence.
GenBankKU3234210.0KU323421.1 UNVERIFIED: Trichosanthes dioica clone TdARF_29 auxin response factor 8-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008381532.15e-80PREDICTED: auxin response factor 8-like
RefseqXP_016182562.11e-79PREDICTED: auxin response factor 8-like, partial
SwissprotQ0J9517e-76ARFL_ORYSJ; Auxin response factor 12
SwissprotQ258Y57e-76ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A0V0GZI76e-83A0A0V0GZI7_SOLCH; Auxin response factor (Fragment)
STRINGVIT_04s0079g00200.t013e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1916422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.14e-74auxin response factor 6